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1 Department of Epidemiology and Preventive Medicine, School of Public Health, Sackler Faculty of Medicine, Tel Aviv University, Ramat Aviv, Israel
2 Departamento de Microbiologia y Ecologia, Campus de Burjassot, Universidad de Valencia, Valencia 46100, Spain
Correspondence
Naiel Bisharat
bisharat_na{at}clalit.org.il
| ABSTRACT |
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Part of this work was done at the Nuffield Department of Clinical Laboratory Sciences, University of Oxford, Oxford, UK.
The GenBank/EMBL/DDBJ accession numbers for the vuuA sequences reported in this paper are DQ973529, DQ973530 and DQ980539; for the wcvI sequences, DQ980540 and DQ980541; for the wza sequences, DQ980542 and DQ980543; and for the ompU sequences, DQ980544, DQ980545 and DQ980546.
Present address: Department of Medicine, section D, Ha'Emek Medical Center, Afula 18101, Israel.
| INTRODUCTION |
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Several molecular techniques have been applied in an attempt to better characterize this emerging pathogen (biotype 3). By pulsed field gel electrophoresis (PFGE) the strains were non-typable (Bisharat et al., 1999
). PCR-RFLP (restriction fragment length polymorphism) of the cytotoxin-haemolysin gene showed that all biotype 3 strains were indistinguishable and distinct from biotypes 1 and 2 (Bisharat et al., 1999
). Similar results were obtained using multi-locus enzyme electrophoresis (Gutacker et al., 2003
). Recent work, based on multi-locus sequence typing (MLST) data revealed that biotype 3 is a recombinant clone that evolved by the hybridization between two populations (Bisharat et al., 2005
). The analysis also showed that all the strains belonging to this clone were genetically uniform among all 10 housekeeping genes analysed.
The fundamental concept behind MLST is to analyse DNA sequence diversity within housekeeping genes encoding enzymes involved in intermediary metabolism, which are not subject to any unusual selective forces, and diversify slowly by the random accumulation of neutral mutations, and therefore better reflect the genetic population structure of the species (Maiden et al., 1998
). Alternatively, the competition between hosts and their pathogens offers clear opportunities for selection to play a prominent evolutionary role. Thus, many pathogens show antigenic surface variations as an adaptation mechanism to evade the immune system and successfully colonize host tissues (Parmley et al., 1994
; Renia et al., 1997
). Nucleotide sequence analysis and serological characterization of outer-membrane proteins (OMPs) may provide insights into the substructure of a homogeneous lineage (based on nucleotide sequence analysis of housekeeping genes) and may identify different subpopulations with an epidemiological interest.
The aim of the present work was to characterize the surface antigens, lipopolysaccharide (LPS) and OMPs of V. vulnificus biotype 3 and to analyse the sequence diversity of selected OMP-encoding genes.
| METHODS |
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Dot-blot assay.
Dot-blot analysis was performed using thermolabile and thermostable antigens as previously described (Cipriano et al., 1985
). Briefly, 1 µl volumes of antigens were dotted onto cellulose membranes (0.5 µm; Bio-Rad) and blocked for 1 h with 3 % (w/v) skimmed milk in Tris-buffered saline (TBS) (50 mM Tris/HCl, pH 7.4). After washing twice with TBS supplemented with 0.05 % Tween 20 (TBS-T), membranes were incubated for 1 h with serial dilutions from 1 : 1000 to 1 : 64 000 of anti-biotype 1, 2 and 3 sera in TBS containing 1 % gelatin (TBS-1). After washing again, membranes were incubated with goat anti-rabbit immunoglobulin G conjugated with alkaline phosphatase (Bio-Rad) diluted at 1 : 3000 in TBS-1 for 1 h. Specific antigenantibody binding was detected by colour development with the substrate solution. Escherichia coli JB101 was used as a negative control. Serum titre was calculated for each antigen as the reciprocal of the lowest antibody dilution giving a similar response to that of the negative control.
Outer-membrane antigens.
OMP and LPS samples were obtained from 24 h bacterial cultures in MSWYE medium as previously described (Amaro et al., 1992a
; Biosca et al., 1993
). Briefly, at mid-exponential phase the bacterial cells were harvested and disrupted by exposing to distilled water. The cell envelopes were collected by centrifugation at 30 000 g for 30 min and treated with a solution of Sarkosyl (sodium lauroyl sarcosinate) at 0.55 % (w/v) for 10 min. After centrifugation at 18 000 g for 2 h (Biosca et al., 1993
), pellets were resuspended in distilled water. Protein concentration was measured by the Lowry method and adjusted to 1 mg ml1. Samples were mixed (1 : 1) with 2x electrophoresis final sample buffer (FSB) (Laemmli, 1970
), boiled for 5 min and stored at 20 °C. LPS extractions were prepared from whole-cell lysates according to the method of Hitchcock & Brown (1983)
as modified by Amaro et al. (1992a)
. After proteinase K treatment (Boehringer Mannheim), samples were mixed (1 : 1) with 2x FSB and boiled for 5 min.
SDS-PAGE and immunoblotting.
LPS and OMP samples were analysed by SDS-PAGE (Laemmli, 1970
) and immunoblotting according to previously described methods (Amaro et al., 1992a
; Biosca et al., 1993
; Esteve-Gassent & Amaro, 2004
). OMPs were visualized by both Coomassie brilliant blue staining and immunostaining with anti-OmpU or anti-VuuA sera (Esteve-Gassent & Amaro, 2004
), and LPS bands by immunostaining with anti-biotype serum (Amaro et al., 1992a
). Prior to immunostaining, protein and LPS bands were transferred from the polyacrylamide gels to nitrocellulose sheets (0.45 µm; Bio-Rad) as described by Towbin et al. (1979)
. Blotting was done at 200 mA for 2 h in Tris/glycine/methanol transfer buffer (25 mM Tris, 192 mM glycine, pH 8.3, and 20 % methanol). The immunological staining of LPS and OMPs was performed using a 1 : 1000 dilution of rabbit anti-biotype 1, 2 and 3 sera, or a 1 : 4000 dilution of anti-OmpU/VuuA serum, respectively (Amaro et al., 1992a
; Esteve-Gassent & Amaro, 2004
). Pre-stained molecular mass markers (Kaleidoscope Prestained Standards; Bio-Rad) were used as controls.
DNA extraction.
The DNeasy kit (Qiagen) was used to extract DNA with the Gram-negative bacterial protocol as recommended by the manufacturer.
Genes chosen for analysis.
The following OMP-encoding genes were chosen for further analysis: wza, encoding an outer-membrane lipoprotein involved in surface assembly of capsular antigen (Wright et al., 2001
); ompU, encoding a major OMP (Park et al., 2006
); vuuA, encoding the ferric vulnibactin outer-membrane receptor (Webster & Litwin, 2000
); and wcvI, encoding a glycosyltransferase involved in capsule synthesis (Smith & Siebeling, 2003
). Mutations in any of these selected genes have been related to some reduction of virulence of vibrios (Provenzano et al., 2001
; Smith & Siebeling, 2003
; Webster & Litwin, 2000
; Wright et al., 2001
).
The fragments sequenced from each of these genes are shown in Table 2
. Primers were designed based on conserved regions from alignment of the nucleotide sequence of these genes from the two clinical strains of V. vulnificus, CMCP6 (GenBank accession nos AE016795 and AE016796) and YJ016 (GenBank accession nos BA000037 and BA000038) (Chen et al., 2003
). The PCR and sequencing primers are shown in Table 3
. For the wza and wcvI genes, the same primers were used for PCR amplification and sequencing (in different concentrations: for PCR amplification 100 pmol µl1 and for sequencing 1 pmol µl1). For the ompU and vuuA genes, two sets of sequencing primers were used to sequence the desired size of the gene fragment. The PCR amplification, PCR product precipitation, sequencing reaction and sequencing precipitation methods were carried out as previously described for the MLST studies of V. vulnificus (Bisharat et al., 2005
). The sequences were assembled using the Staden suite of computer programs (Staden, 1996
). The number of polymorphic nucleotide sites and the calculation of dN/dS ratio (non-synonymous/synonymous substitutions) were estimated using the program START (Jolley et al., 2001
). The phylogenetic relationships between the different strains were investigated using distance matrix methods, also known as clustering algorithmic methods [neighbour-joining (NJ) tree], as implemented in MEGA (molecular evolutionary genetic analysis) (http://www.megasoftware.net) version 3.1 (Kumar et al., 2004
). The phylogenetic relationships between the different strains based on sequencing of OMP-encoding genes (current study) were compared with the phylogenetic relationships based on concatenated sequences from MLST data from a previous study (Bisharat et al., 2005
). For this analysis the nucleotide sequences of 10 MLST loci, making up the sequence type of each strain, were concatenated into a single (4326 bp) length of DNA representing each strain. The bootstrapping method was used to test the accuracy of the clustering. The values on the NJ tree are percentages of 500 computer-generated trees produced by randomly sampling the sequences and are shown at the nodes.
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| RESULTS |
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The results of dot-blot assays using thermostable (boiled cells) and thermolabile (fresh cells) antigens from strains of the three biotypes are also shown in Table 4
. Titres for each serum, evaluated with the homologous strain, were
64 000, regardless of the antigen used. The anti-biotype 3 serum gave the same titres with all biotype 3 strains, including the homologous strain (Table 4
). Clear cross-reactions between biotypes were detected when thermolabile antigens were used (titres between 16 000 and 32 000) but not with thermostable antigens (titres=2000) (Table 4
).
OMP patterns from selected strains of the three biotypes are shown in Fig. 1
. The OMP patterns of biotype 3 strains were almost identical and similar to those of the selected strains of biotype 1 and 2 (Fig. 1a
). Part of the similarity was revealed by immunoblotting with specific antisera (Fig. 1b
). Thus, a band that co-migrated as the protein OmpU and the other as protein VuuA were identified in the OMP samples from all strains and biotypes (Fig. 1b
). The band patterns of the three biotypes mainly differed in two major bands additional to OmpU, one of about 44 kDa, present in biotype 2 strain (lanes 1 and 2 in Fig. 1a
) and the other of about 32 kDa, present in biotype 1 strain (lane 3 in Fig. 1a
).
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Nucleotide sequence analysis revealed that all biotype 3 strains had identical sequences at each of the four genes examined. This result was in contrast to those of biotypes 1 and 2, for which almost every strain exhibited sequence diversity compared to the other strains of the homologous biotype. Cluster analysis of the individual genes produced two groups, yet the strains within the groups varied by gene (Fig. 3
). It also showed that biotype 3 strains form a distinct and homogeneous clone, yet closely related to strains of biotypes 1 and 2, compatible with the OMP patterns obtained using SDS-PAGE (Fig. 1
). For presentation purposes, only a subset of the strains was used for constructing the phylogenetic trees (11 biotype 1, 2 biotype 2 and 2 biotype 3 strains). For the wcvI gene only nine sequences are shown; the remaining sequences were identical to the main group in the middle and for presentation purposes were taken out.
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| DISCUSSION |
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Analysis of DNA sequence diversity of selected OMP-encoding genes showed that biotype 3 strains form a genetically homogeneous clone, yet closely related to those of biotypes 1 and 2. These findings are compatible with the OMP patterns obtained (Fig. 1
), suggesting that OMPs from the three biotypes are closely related. In fact, our goal of identifying subpopulations within the homogeneous biotype 3 was not achieved.
Elements suggestive of recent evolution from the parent population of V. vulnificus were associated with biotype 3: the lack of any genetic diversity among both housekeeping genes (Bisharat et al., 2005
) and OMP-encoding genes (present analysis), the distinct biochemical characteristics (Bisharat et al., 1999
) and the clear association with disease in humans. In fact, biotype 3 and biotype 2-serovar E share some interesting similarities, most remarkably the finding that they both express a homogeneous LPS (Biosca et al., 1996
and present analysis), both are genetically homogeneous among MLST loci (Bisharat et al., 2005
, Fig. 4
and unpublished data), both exhibit a distinct biochemical pattern (Bisharat et al., 1999
; Tison et al., 1982
) and, finally, each has a very specific niche, biotype 2-serovar E primarily affecting eels and biotype 3 affecting only humans.
Maynard Smith et al. (Smith et al., 1993
) have suggested a model where clonal lineages emerge due to the acquisition of a strong selective advantage, which allows them to rise rapidly in frequency in the population, and as the strains diverge and specialize on their respective hosts, they become more reproductively isolated, eventually creating distinct lineages. In synthesizing these observations, we hypothesize that biotype 2-serovar E and biotype 3 have only recently descended from the parent population of V. vulnificus.
To date, the homogeneous biotype 3 has been isolated only in Israel. Data suggest that it has been circulating within Israeli fish farms at least since 1981 (Bisharat et al., 1999
). Therefore, the exact cause for the disease outbreak in the 1990s has yet to be determined. Initially, it was suggested that changes in fish marketing procedures may have facilitated the disease outbreak (Bisharat & Raz, 1996
). However, and despite the implementation of a new fish marketing policy, disease continued (N. Bisharat, unpublished data). A possible link between regional impact of global warming on the Eastern Mediterranean basin and disease outbreak has recently been suggested (Paz et al., 2006
).
In view of the trend of exporting stocks of cultured Tilapia fish (from Israel) the appearance of this virulent V. vulnificus biotype in other parts of the world should be considered. Interestingly, it has been speculated that the appearance of biotype 2 in European eel farms has probably occurred due to imports of carrier eels from Japan (Amaro et al., 2001
), where the biotype was originally described (Tison et al., 1982
).
The distinctiveness of the LPS of biotype 3 from the LPS of the other biotypes of V. vulnificus could be utilized for the development of rapid methods for the specific detection of this pathogen, as has been achieved for biotype 2 (Biosca et al., 1997
), and for the generation of LPS-based vaccines. The use of LPS-based vaccines in humans has not been successful so far, because of either the heterogeneity of the LPS molecule or the lack of sufficient immunogenicity, although recently some promising results were reported using immunogenic protein carrier covalently linked to O-deacylated lipopolysaccharide (LPS) derived from Neisseria meningitidis in animal models (Cox et al., 2005
). Thus far, the use of LPS-based vaccines against vibriosis in eels has not been promising and the authors suggested that LPS from V. vulnificus serovar E may not be immunogenic for eels (Collado et al., 2000
). Others, however, have reported more encouraging results against other vibrios (Fukuda & Kusuda, 1985
; Salati & Kusuda, 1985
). Studies are currently under way to determine whether the LPS molecule of V. vulnificus biotype 3 can elicit a significant immune response in humans (N. Bisharat, unpublished data).
In summary, the present work reaffirms the highly clonal nature of V. vulnificus biotype 3 and suggests that it has only recently evolved from the parent population. Future studies should focus on utilizing the present data for developing rapid detection methods, inquiring whether the LPS molecule is immunogenic in humans, and determining the feasibility and the effectiveness of LPS-based vaccines in humans.
| ACKNOWLEDGEMENTS |
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Edited by: P. H. Everest
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Received 26 October 2006;
revised 26 November 2006;
accepted 6 December 2006.
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